Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs12268849 chr10:104737682 G/A 2.73E-9 503 31.03 34.83 29.58 KM Plot
THCA rs12274630 chr11:107315880 A/G 5.77E-9 503 31.7 30.08 23.38 KM Plot
THCA rs12283679 chr11:77956996 C/CT 6.75E-6 493 32.87 30.57 31.43 KM Plot
THCA rs12303758 chr12:14444514 C/G 5.34E-5 498 31.4 36.93 32.45 KM Plot
THCA rs12311018 chr12:14441305 G/A 5.75E-5 496 31.38 36.73 32.45 KM Plot
THCA rs12319352 chr12:14453731 T/C 5.34E-5 498 31.4 36.93 32.45 KM Plot
THCA rs12329434 chr20:47260191 T/C 0 499 31.6 32.03 6.78 KM Plot
THCA rs12359043 chr10:110962536 C/T 0.000133 502 31.47 32.13 32.1 KM Plot
THCA rs12359118 chr10:110962990 C/A 0.000132 501 31.47 32.13 32.1 KM Plot
THCA rs12359789 chr10:110949314 C/A 0.00014 500 31.47 32.9 32.1 KM Plot
THCA rs12416666 chr10:81627277 C/T 1.26E-9 488 31.7 31.45 14.52 KM Plot
THCA rs12416865 chr11:123531774 T/C 1.64E-6 503 31.83 28.85 24.67 KM Plot
THCA rs12417316 chr11:123529242 A/G 4.12E-5 502 31.92 28.28 24.67 KM Plot
THCA rs12419737 chr11:123528979 A/G 2.12E-5 503 22.6 27.83 31.92 KM Plot
THCA rs12420072 chr11:123529277 G/A 2.61E-5 502 31.87 28.33 26.73 KM Plot